Parsing of tags in paf files speed up considerably.
Added options to read paf files while skipping tags, or convert data.frames to pafr objects.
highlight functions for dotplots no longer require the ordering and alignment arguments to be duplicated from the parent plot.
Added tests and more documentation examples
pafr 0.0.1
First (pre-)release level package
contains core functions for reading paf alignments, producing dotplots with flexible ordering of sequences and ‘coverage’ and ‘synteny’ plots to visualize alignments
Exported functions all have function-level documentation with examples
Includes Vignette descirbin the data format and plots