David Winter

  • RSS
  • Blog
  • Archives

Category: Sequence-data

2012

MMOD does sequences

Nov 17 2012
posted in mmod, sequence-data

Recent Posts

  • MMOD does sequences
  • rentrez - an R package for interfacing with the NCBI's databases

GitHub Repos

  • kakapo_aspergillosis

    Working directory for analysis of kākāpō _Aspergillus_ isolates

  • hyliter

    R package to connect HyLiTE output to the DeSeq2 differential gene expression software

  • genome_factory

    scripts and recipies for working on Epichloe genomes

  • dwinter

  • 247.782

    Special topic in computational biology

  • computing-for-biologists

  • accuMUlate

    code for calling mutatons from MA lines

  • dwinter.info

    Personal academic website

  • fl1_genome_scripts

    Scripts and analysis utils to support a manuscript describing the Fl1 genome

  • accumulate-demonstration

    Code used to demonstrate the use of accuMUlate

  • accuMulate-tools

    Scripts to help prepare files for accuMulate and process the results

  • dfe

    Fitting, simulating and generally exploring the distribution of fitness effects from MA studies

  • gsi_simulations

    Simulations for a manuscript describing the statistical properties of the genealogical sorting index

  • freqseq

    Simple tool for calculating frequencies of "read alleles" in BAM file

  • galaxiids

    Analysis of some fishy genomes

  • gsi

  • dwinter.github.com

  • Fungal-Foray

    Working directory of of my attempt to visualize fungi-host relationships in NZ forests

@dwinter on GitHub

Latest Tweets

  • Status updating...
Follow @theatavism

Copyright © 2013 - David Winter - Powered by Octopress. Design by Octopress Themes.